Gene Expression Data Explorer
Info Gene counts are sourced from ARCHS4, which provides uniform alignment of GEO samples. You can learn more about ARCHS4 and its pipeline here.
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GROUP CONDITION SAMPLES
3T3-L1 cells
GSM2494889 GSM2494890
GSM2494899 GSM2494900
GSM2494887 GSM2494888
GSM2494903 GSM2494904
GSM2494897 GSM2494898
GSM2494901 GSM2494902
GSM2494893 GSM2494894
GSM2494885 GSM2494886
GSM2494895 GSM2494896
GSM2494891 GSM2494892
Description

Submission Date: Feb 17, 2017

Summary: The gene encoding for transcription factor 7-like 2 (TCF7L2) is the strongest type 2 diabetes (T2DM) candidate gene discovered to date. While its association with T2DM has been replicated in most populations worldwide, the molecular and physiological mechanisms that underlie this association remain largely unknown. As a key transcriptional effector of the Wnt/β-catenin signaling pathway, we hypothesized that TCF7L2 plays an important role in the development and function of adipocytes. Using a combination of in vitro and in vivo approaches, we show that TCF7L2 is critical for proper adipogenesis and that inactivating TCF7L2 mediated transcription by removing its DNA binding domain in mature adipocytes leads to whole-body glucose intolerance and hepatic insulin resistance in mice. This effect is secondary to an increase in subcutaneous adipose tissue mass caused by adipocyte hypertrophy that worsens with age and with high-fat feeding. Finally, in humans with adipocyte insulin resistance we demonstrate that TCF7L2 expression is downregulated, highlighting the translational importance of our findings. In summary our data indicate that TCF7L2 is an important mediator of adipocyte biology and has key roles in adipose tissue development and function.

GEO Accession ID: GSE95029

PMID: 29317436

Description

Submission Date: Feb 17, 2017

Summary: The gene encoding for transcription factor 7-like 2 (TCF7L2) is the strongest type 2 diabetes (T2DM) candidate gene discovered to date. While its association with T2DM has been replicated in most populations worldwide, the molecular and physiological mechanisms that underlie this association remain largely unknown. As a key transcriptional effector of the Wnt/β-catenin signaling pathway, we hypothesized that TCF7L2 plays an important role in the development and function of adipocytes. Using a combination of in vitro and in vivo approaches, we show that TCF7L2 is critical for proper adipogenesis and that inactivating TCF7L2 mediated transcription by removing its DNA binding domain in mature adipocytes leads to whole-body glucose intolerance and hepatic insulin resistance in mice. This effect is secondary to an increase in subcutaneous adipose tissue mass caused by adipocyte hypertrophy that worsens with age and with high-fat feeding. Finally, in humans with adipocyte insulin resistance we demonstrate that TCF7L2 expression is downregulated, highlighting the translational importance of our findings. In summary our data indicate that TCF7L2 is an important mediator of adipocyte biology and has key roles in adipose tissue development and function.

GEO Accession ID: GSE95029

PMID: 29317436

Visualize Samples

Info Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.

Precomputed Differential Gene Expression

Info Differential expression signatures are automatically computed using the limma R package. More options for differential expression are available to compute below.

Signatures:

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Control Condition

Perturbation Condition

Only conditions with at least 1 replicate are available to select

Differential Gene Expression Analysis
Info Differential expression signatures can be computed using DESeq2 or characteristic direction.
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Bulk RNA-seq Appyter

This pipeline enables you to analyze and visualize your bulk RNA sequencing datasets with an array of downstream analysis and visualization tools. The pipeline includes: PCA analysis, Clustergrammer interactive heatmap, library size analysis, differential gene expression analysis, enrichment analysis, and L1000 small molecule search.