Microarray Data Explorer
Info Raw gene Expression data is sourced from GEO, and the appropriate db package for mapping probes to gene symbols was sourced from the Bioconductor AnnotationData packages. You can read more about microarray data here.
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GROUP CONDITION SAMPLES
liver
GSM1602122 GSM1602123 GSM1602124
GSM1602125 GSM1602126 GSM1602127
Description

Submission Date: Feb 04, 2015

Summary: Control and Liver Insulin Receptor KO mice (LIRKO) were sacrificed in the non-fasted state. RNA was prepared from liver samples and subjected to expression microarray analysis

Each array was hybridized with sample derived from 2-3 mice of the same genotype.

GEO Accession ID: GSE65624

PMID: 25849138

Description

Submission Date: Feb 04, 2015

Summary: Control and Liver Insulin Receptor KO mice (LIRKO) were sacrificed in the non-fasted state. RNA was prepared from liver samples and subjected to expression microarray analysis

Each array was hybridized with sample derived from 2-3 mice of the same genotype.

GEO Accession ID: GSE65624

PMID: 25849138

Visualize Samples

Info Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.

Precomputed Differential Gene Expression

Info Differential expression signatures are automatically computed using the limma R package. More options for differential expression are available to compute below.

Signatures:

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Control Condition

Perturbation Condition

Only conditions with at least 1 replicate are available to select

Differential Gene Expression Analysis
Info Differential expression signatures can be computed using DESeq2 or characteristic direction.
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