Gene counts are sourced from ARCHS4, which provides uniform alignment of GEO samples.
You can learn more about ARCHS4 and its pipeline here.
Select conditions below to toggle them from the plot:
| GROUP | CONDITION | SAMPLES |
|---|---|---|
| epididymal white adipose tissue |
GSM6138671 GSM6138672 GSM6138673 GSM6138674
|
|
|
GSM6138675 GSM6138676 GSM6138677 GSM6138678
|
||
| inguinal white adipose tissue |
GSM6138663 GSM6138664 GSM6138665 GSM6138666
|
|
|
GSM6138667 GSM6138668 GSM6138669 GSM6138670
|
||
| intrascapular brown adipose tissue |
GSM6138687 GSM6138688 GSM6138689 GSM6138690
|
|
|
GSM6138691 GSM6138692 GSM6138693 GSM6138694
|
||
| liver |
GSM6138679 GSM6138680 GSM6138681 GSM6138682
|
|
|
GSM6138683 GSM6138684 GSM6138685 GSM6138686
|
Submission Date: May 13, 2022
Summary: Low-grade, sustained inflammation in white adipose tissue (WAT) characterizes obesity and frequently coincides with insulin resistance and type 2 diabetes (T2D). However, pharmacological targeting of WAT inflammation lacks durable therapeutic effects. Through a computational screen, we identified the FDA-approved rheumatoid arthritis drug auranofin is a putative small molecule for obesity treatment. We discovered that allometrically scaled safe auranofin doses homed to WAT and improved insulin sensitivity in obese wild-type mice. To assess the transcriptional changes underlying the beneficial effects of auranofin, we performed RNA-seq analysis on adipose and liver tissue after 4 weeks of treatment with vehicle or auranofin.
GEO Accession ID: GSE202935
PMID: 36243005
Submission Date: May 13, 2022
Summary: Low-grade, sustained inflammation in white adipose tissue (WAT) characterizes obesity and frequently coincides with insulin resistance and type 2 diabetes (T2D). However, pharmacological targeting of WAT inflammation lacks durable therapeutic effects. Through a computational screen, we identified the FDA-approved rheumatoid arthritis drug auranofin is a putative small molecule for obesity treatment. We discovered that allometrically scaled safe auranofin doses homed to WAT and improved insulin sensitivity in obese wild-type mice. To assess the transcriptional changes underlying the beneficial effects of auranofin, we performed RNA-seq analysis on adipose and liver tissue after 4 weeks of treatment with vehicle or auranofin.
GEO Accession ID: GSE202935
PMID: 36243005
Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.
Differential expression signatures are automatically computed using the limma R package.
More options for differential expression are available to compute below.
Signatures:
Control Condition
Perturbation Condition
Only conditions with at least 1 replicate are available to select
Differential expression signatures can be computed using DESeq2 or characteristic direction.
This pipeline enables you to analyze and visualize your bulk RNA sequencing datasets with an array of downstream analysis and visualization tools. The pipeline includes: PCA analysis, Clustergrammer interactive heatmap, library size analysis, differential gene expression analysis, enrichment analysis, and L1000 small molecule search.