Microarray Data Explorer
Info Raw gene Expression data is sourced from GEO, and the appropriate db package for mapping probes to gene symbols was sourced from the Bioconductor AnnotationData packages. You can read more about microarray data here.
Enter gene symbol:

Select conditions below to toggle them from the plot:

GROUP CONDITION SAMPLES
Case condition
GSM4911728 GSM4911730 GSM4911732 GSM4911734 GSM4911736 GSM4911738 GSM4911740
GSM4911727 GSM4911729 GSM4911731 GSM4911733 GSM4911735 GSM4911737 GSM4911739
Control condition
GSM4911742 GSM4911744 GSM4911746 GSM4911748 GSM4911750
GSM4911741 GSM4911743 GSM4911745 GSM4911747 GSM4911749
Description

Submission Date: Nov 17, 2020

Summary: We used gene expression microarray to understand the gene expression changes in skeletal muscle one year follow RYGB weight loss surgery.

GEO Accession ID: GSE161643

PMID: No Pubmed ID

Description

Submission Date: Nov 17, 2020

Summary: We used gene expression microarray to understand the gene expression changes in skeletal muscle one year follow RYGB weight loss surgery.

GEO Accession ID: GSE161643

PMID: No Pubmed ID

Visualize Samples

Info Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.

Precomputed Differential Gene Expression

Info Differential expression signatures are automatically computed using the limma R package. More options for differential expression are available to compute below.

Signatures:

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Control Condition

Perturbation Condition

Only conditions with at least 1 replicate are available to select

Differential Gene Expression Analysis
Info Differential expression signatures can be computed using DESeq2 or characteristic direction.
Select differential expression analysis method: