Raw gene Expression data is sourced from GEO, and the appropriate db package for mapping probes to gene symbols was sourced from the Bioconductor AnnotationData packages.
You can read more about microarray data here.
Select conditions below to toggle them from the plot:
| GROUP | CONDITION | SAMPLES |
|---|---|---|
| Fetal Liver Hepatocytes |
GSM4665801 GSM4665802 GSM4665803
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GSM4665795 GSM4665796 GSM4665797
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GSM4665798 GSM4665799 GSM4665800
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GSM4665804 GSM4665805 GSM4665806
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GSM4665792 GSM4665793 GSM4665794
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GSM4665789 GSM4665790 GSM4665791
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Submission Date: Jul 10, 2020
Summary: The successfully immortalized fetal human hepatocytes expressed large numbers of hepatic and other genes. The expression of gene groups and networks
was maintained over extended culture.
GEO Accession ID: GSE154198
PMID: No Pubmed ID
Submission Date: Jul 10, 2020
Summary: The successfully immortalized fetal human hepatocytes expressed large numbers of hepatic and other genes. The expression of gene groups and networks
was maintained over extended culture.
GEO Accession ID: GSE154198
PMID: No Pubmed ID
Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.
Differential expression signatures are automatically computed using the limma R package.
More options for differential expression are available to compute below.
Signatures:
Control Condition
Perturbation Condition
Only conditions with at least 1 replicate are available to select
Differential expression signatures can be computed using DESeq2 or characteristic direction.