Gene counts are sourced from ARCHS4, which provides uniform alignment of GEO samples.
You can learn more about ARCHS4 and its pipeline here.
Select conditions below to toggle them from the plot:
| GROUP | CONDITION | SAMPLES |
|---|---|---|
| Skin |
GSM4288333 GSM4288335 GSM4288336 GSM4288337 GSM4288338 GSM4288339 GSM4288340 GSM4288341 GSM4288342 GSM4288343 GSM4288344
|
|
|
GSM4288318 GSM4288319 GSM4288320 GSM4288321 GSM4288322 GSM4288323 GSM4288324 GSM4288325 GSM4288327 GSM4288328 GSM4288329 GSM4288330 GSM4288332
|
Submission Date: Jan 29, 2020
Summary: We investigated genome wide changes in gene expression in skin between patients with type 2 diabetes and non-diabetic patients using next generation sequencing. We compared the gene expression in skin samples taken from 27 patients (13 with type 2 diabetes and 14 non-diabetic).
GEO Accession ID: GSE144441
PMID: No Pubmed ID
Submission Date: Jan 29, 2020
Summary: We investigated genome wide changes in gene expression in skin between patients with type 2 diabetes and non-diabetic patients using next generation sequencing. We compared the gene expression in skin samples taken from 27 patients (13 with type 2 diabetes and 14 non-diabetic).
GEO Accession ID: GSE144441
PMID: No Pubmed ID
Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.
Differential expression signatures are automatically computed using the limma R package.
More options for differential expression are available to compute below.
Signatures:
Control Condition
Perturbation Condition
Only conditions with at least 1 replicate are available to select
Differential expression signatures can be computed using DESeq2 or characteristic direction.
This pipeline enables you to analyze and visualize your bulk RNA sequencing datasets with an array of downstream analysis and visualization tools. The pipeline includes: PCA analysis, Clustergrammer interactive heatmap, library size analysis, differential gene expression analysis, enrichment analysis, and L1000 small molecule search.