Gene counts are sourced from ARCHS4, which provides uniform alignment of GEO samples.
You can learn more about ARCHS4 and its pipeline here.
Select conditions below to toggle them from the plot:
| GROUP | CONDITION | SAMPLES |
|---|---|---|
| pancreas |
GSM4066398 GSM4066399 GSM4066400
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GSM4066401 GSM4066402 GSM4066403
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Submission Date: Sep 08, 2019
Summary: Epigenetic silencing of HLTF in human β cells alters insulin secretion and is associated with diabetes. Here we examine the effects of Hltf-deletion on β cell function in genetically engineered mouse models. The developmental timeline for the exclusive expression of full-length Hltf mRNA and protein overlaps with the organization of murine pancreatic islets. Reduced insulin in the pancreatic β cells of global Hltf-deleted near-term (E18.5) fetal mice predicts postpartum hypoinsulinemia. Seventy-five percent of newborn global Hltf-deleted postprandial mice die at a ratio of 3:2 males to females with negligible serum insulin levels, and their apoptotic β cells are devoid of insulin. They are also hypoglycemic. Newborn β cell-specific Hltf-deleted mice succumb to the same loss of glucose homeostasis indicating the phenotype is solely attributable to loss of β cell function. Confirmation that an intact immune system is an absolute requirement for the phenotype resulted from breeding the Hltf-deletion into the Rag2-IL2-null background. Triple null (Hltf-/-Rag2-/-IL2-/-) newborn mice that lack functional receptors for IL-2,-4,-7,-9,-15, and -21, and have severe lymphocyte developmental impairment (deficient T and B cells, no NK cells) are euglycemic and normoinsulinemic with normal survival rates. Transcriptomic profiling (RNA-seq) eliminated β cell-specific Hltf-deletion on gene programs essential for normal development, and β cell secretion. Significantly, Hltf-deletion induced IL33/β cell signaling that promoted islet infiltration of fetal CD8+T cells and β cell apoptosis. Our data suggest, Hltf-deleted newborns that are not profoundly hypoglycemic survive in the absence of memory CD8+T cells. These Hltf-deletion studies provide mechanistic insights to how Hltf-deletion in β cells promotes their immune destruction.
GEO Accession ID: GSE137060
PMID: No Pubmed ID
Submission Date: Sep 08, 2019
Summary: Epigenetic silencing of HLTF in human β cells alters insulin secretion and is associated with diabetes. Here we examine the effects of Hltf-deletion on β cell function in genetically engineered mouse models. The developmental timeline for the exclusive expression of full-length Hltf mRNA and protein overlaps with the organization of murine pancreatic islets. Reduced insulin in the pancreatic β cells of global Hltf-deleted near-term (E18.5) fetal mice predicts postpartum hypoinsulinemia. Seventy-five percent of newborn global Hltf-deleted postprandial mice die at a ratio of 3:2 males to females with negligible serum insulin levels, and their apoptotic β cells are devoid of insulin. They are also hypoglycemic. Newborn β cell-specific Hltf-deleted mice succumb to the same loss of glucose homeostasis indicating the phenotype is solely attributable to loss of β cell function. Confirmation that an intact immune system is an absolute requirement for the phenotype resulted from breeding the Hltf-deletion into the Rag2-IL2-null background. Triple null (Hltf-/-Rag2-/-IL2-/-) newborn mice that lack functional receptors for IL-2,-4,-7,-9,-15, and -21, and have severe lymphocyte developmental impairment (deficient T and B cells, no NK cells) are euglycemic and normoinsulinemic with normal survival rates. Transcriptomic profiling (RNA-seq) eliminated β cell-specific Hltf-deletion on gene programs essential for normal development, and β cell secretion. Significantly, Hltf-deletion induced IL33/β cell signaling that promoted islet infiltration of fetal CD8+T cells and β cell apoptosis. Our data suggest, Hltf-deleted newborns that are not profoundly hypoglycemic survive in the absence of memory CD8+T cells. These Hltf-deletion studies provide mechanistic insights to how Hltf-deletion in β cells promotes their immune destruction.
GEO Accession ID: GSE137060
PMID: No Pubmed ID
Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.
Differential expression signatures are automatically computed using the limma R package.
More options for differential expression are available to compute below.
Signatures:
Control Condition
Perturbation Condition
Only conditions with at least 1 replicate are available to select
Differential expression signatures can be computed using DESeq2 or characteristic direction.
This pipeline enables you to analyze and visualize your bulk RNA sequencing datasets with an array of downstream analysis and visualization tools. The pipeline includes: PCA analysis, Clustergrammer interactive heatmap, library size analysis, differential gene expression analysis, enrichment analysis, and L1000 small molecule search.