Gene counts are sourced from ARCHS4, which provides uniform alignment of GEO samples.
You can learn more about ARCHS4 and its pipeline here.
Select conditions below to toggle them from the plot:
| GROUP | CONDITION | SAMPLES |
|---|---|---|
| Human Islets |
GSM3935889 GSM3935894 GSM3935895 GSM3935900 GSM3935901 GSM3935903
|
|
|
GSM3935890 GSM3935893 GSM3935896 GSM3935899 GSM3935904 GSM3935905 GSM3935906
|
||
|
GSM3935891 GSM3935892 GSM3935897 GSM3935898 GSM3935902
|
Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.
Differential expression signatures are automatically computed using the limma R package.
More options for differential expression are available to compute below.
Signatures:
Control Condition
Perturbation Condition
Only conditions with at least 1 replicate are available to select
Differential expression signatures can be computed using DESeq2 or characteristic direction.