Microarray Data Explorer
Info Raw gene Expression data is sourced from GEO, and the appropriate db package for mapping probes to gene symbols was sourced from the Bioconductor AnnotationData packages. You can read more about microarray data here.
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GROUP CONDITION SAMPLES
Heart
GSM275315 GSM275316 GSM275317
GSM275318 GSM275319 GSM275320
Description

Submission Date: Mar 14, 2008

Summary: Hearts Lacking Caveolin-1 Develop Hypertrophy with Normal Cardiac Substrate Metabolism

Keywords: gene knockout

GEO Accession ID: GSE10849

PMID: 18719368

Description

Submission Date: Mar 14, 2008

Summary: Hearts Lacking Caveolin-1 Develop Hypertrophy with Normal Cardiac Substrate Metabolism

Keywords: gene knockout

GEO Accession ID: GSE10849

PMID: 18719368

Visualize Samples

Info Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.

Precomputed Differential Gene Expression

Info Differential expression signatures are automatically computed using the limma R package. More options for differential expression are available to compute below.

Signatures:

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Control Condition

Perturbation Condition

Only conditions with at least 1 replicate are available to select

Differential Gene Expression Analysis
Info Differential expression signatures can be computed using DESeq2 or characteristic direction.
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