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Microarray Data Explorer
Raw gene Expression data is sourced from GEO, and the appropriate db package for mapping probes to gene symbols was sourced from the Bioconductor AnnotationData packages.
You can read more about microarray data here.
Raw gene Expression data is sourced from GEO, and the appropriate db package for mapping probes to gene symbols was sourced from the Bioconductor AnnotationData packages.
You can read more about microarray data here.
Enter gene symbol:
Select conditions below to toggle them from the plot:
| GROUP | CONDITION | SAMPLES |
|---|---|---|
| Brain |
GSM2728750 GSM2728751 GSM2728752 GSM2728753 GSM2728754 GSM2728755 GSM2728756 GSM2728757 GSM2728758
|
|
|
GSM2728759 GSM2728760 GSM2728761 GSM2728762 GSM2728763 GSM2728764 GSM2728765 GSM2728766
|
mouse
GSE102137
Visualize Samples
Visualizations are precomputed using the Python package scanpy on the top 5000 most variable genes.
Precomputed Differential Gene Expression
Differential expression signatures are automatically computed using the limma R package.
More options for differential expression are available to compute below.
Signatures:
Select conditions:
Control Condition
Perturbation Condition
Only conditions with at least 1 replicate are available to select
Differential Gene Expression Analysis
Differential expression signatures can be computed using DESeq2 or characteristic direction.
Differential expression signatures can be computed using DESeq2 or characteristic direction.
Select differential expression analysis method: